Friday, October 25, 2019

One Hundred Books About Physics for Medicine and Biology

When I was in high school, I became intrigued by St. John’s College and their Great Books program. I had their brochure, which included a list of the books to read each year; the most famous works of western civilization.

In the spirit of St. John’s, below I list one hundred Great Books about physics applied to medicine and biology. Read all these and you will have obtained a liberal education in biological and medical physics. One book you won’t find on this list is Intermediate Physics for Medicine and Biology. I’m going to assume you’ve already read IPMB and my goal is to suggest books to supplement it.

Where to begin? I’ll assume you have taken a year of physics and a year of calculus. Once you have these prerequisites, start reading.
  1. Powers of Ten. First an overview that’s easy and fun. It provides an intuitive feel for the relative sizes of things. 
  2. The Machinery of Life. Although I’m assuming you’ve studied some physics and math, I’m not assuming you have much background in biology. This book provides a gentle introduction to biochemistry. Plus, it has those wonderful drawings by David Goodsell
  3. The Art of Insight in Science and Engineering. Remember: We seek insight, not just facts.
  4. Physical Models of Living Systems. IPMB is about modeling in medicine and biology. Philip Nelson’s little book gets us started building models. 
  5. The Feynman Lectures on Physics. I know, I’ve already studied introductory physics, but The Feynman Lectures are special. You don’t want to miss them, and they contain some biology too.
  6. Air and Water. Now we get to our main topic: physics applied to biology. Mark Denny’s book covers many topics found in the first half of IPMB.
  7. Physics with Illustrative Examples from Medicine and Biology. This classic three-volume set covers much of the same ground as IPMB.
  8. The Double Helix. To further strengthen your background in biology, read James Watson’s first-person account of how he and Francis Crick discovered the structure of DNA. It’s a required text for any student of science, and is an easy read.
  9. The Eighth Day of Creation: The Makers of the Revolution in Biology. After warming up with The Double Helix, it’s time to dig deeper into the history and ideas of modern biology. Physicists play a large role in this book, and it’s wonderfully written.
  10. Biomechanics of Human Motion. Chapter 1 in IPMB covers statics applied to the bones and muscles of the body. It’s our first book that focuses in detail on a specific topic.
  11. Structures, or Why Things Don’t Fall Down. A delightful book about mechanics, including some biomechanical examples. It’s one of the most enjoyable books on this list. Don’t miss the sequel, The New Science of Strong Materials.
  12. Biomechanics: Mechanical Properties of Living Tissue. We need a book about biomechanics that treats tissue as a continuous medium. YC Fung’s textbook fills that niche.
  13. A Treatise on the Mathematical Theory of Elasticity. This book is long and technical, and may contain more material than you really need to know. Nevertheless, it’s a great place to learn elasticity. I’m sure there are more modern books that you may prefer. Skip if you’re in a hurry.
  14. The Physics of Scuba Diving. An easy read about how hydrostatics impacts divers.
  15. Life in Moving Fluids. Fluid dynamics is one of those topics that’s critical to life, but is often skipped in introductory physics classes. This book by Steven Vogel provides an excellent introduction to the field of biological fluid dynamics.
  16. Vital Circuits. Another book by Vogel, which focuses on the fluid dynamics of the circulatory system. 
  17. Boundary Layer Theory. This large tome may be too advanced for the list, but I learned a lot from it. Skip if you need to move along quickly.
  18. Textbook of Medical Physiology. We need to get serious about learning physiology. This classic text is by Arthur Guyton, but any good physiology textbook will do. Not much physics here. The book contains more biology than we need, but physiology is too important to skip.
  19. e, The Story of a Number. A gentle introduction into calculus and differential equations, and a great history of the exponential function, the topic of IPMB’s second chapter.
  20. Quick Calculus. Yes, you already studied calculus. But we are about to get more mathematical, and this book will help you brush up on math you may have forgotten. If you don’t need it, move on. 
  21. Used Math. Finish your math review with this outline of mathematics essential for college physics.
  22. The Essential Exponential. It’s time to focus specifically on the exponential function and its properties, so important in biology and medicine.
  23. A Change of Heart. Chapter 2 of IPMB mentions the Framingham heart study. Read the story behind the project.
  24. On Being the Right Size. This is really an essay, but indulge me while I include it here among the books. J. B. S. Haldane is too fascinating of a writer to miss.
  25. Scaling: Why is Animal Size so Important? Knut Schmidt-Nielsen’s study of scaling, a key topic in Chapter 2 of IPMB.
  26. Lady Luck. Chapter 3 of IPMB requires us to know some probability, and Warren Weaver’s book is an engaging introduction.
  27. Statistical Physics. The first few sections of Chapter 3 in IPMB develop the ideas of statistical physics in a way reminiscent of Frederick Reif’s volume in the Berkeley Physics Course.
  28. An Introduction to Thermal Physics. For those who want a more traditional approach to thermodynamics, I recommend Daniel Schroeder’s textbook.
  29. Lehninger Principles of Biochemistry. Biological thermodynamics overlaps with biochemistry. Any good biochemistry book will do. They all contain more detail than you need, but a biological physicist must know some biochemistry.
  30. The Second Law. This delightful book by Peter Atkins will fill a hole in IPMB: a penetrating discussion about the second law of thermodynamics.
  31. Div Grad Curl and All That. Chapter 4 of IPMB uses vector calculus, and there is no better introduction to the topic.
  32. Random Walks in Biology. Howard Berg’s wonderful little book about diffusion.
  33. The Mathematics of Diffusion. John Crank’s intimidating giant tome about diffusion. Mathephobes shouldn’t bother with it; Mathephiles shouldn’t miss it.
  34. Conduction of Heat in Solids. Like the book by Crank, this ponderous textbook by Horatio Carslaw and John Jaeger presents all you ever want to know about solving the heat equation (also known as the diffusion equation).
  35. How Animals Work. Another delightful book by Schmidt-Nielsen that considers comparative physiology, and topics in Chapter 5 of IPMB such as countercurrent heat exchange.
  36. The Nuts and Bolts of Life. A colorful book about the first dialysis machine.
  37. The Biomedical Engineering Handbook. Don’t read this encyclopedia-like multi-volume handbook in one sitting. Yet it provides dozens of examples of how physics is applied to medicine. Ask your library to buy this set and the next one.
  38. Encyclopedia of Medical Devices and Instrumentation. The title should be Case Studies: How Physics is Applied to Medicine.
  39. Plant Physics. IPMB doesn’t say much about plants, but physics impacts botany as well as zoology.
  40. Nerve, Muscle, and Synapse. Bernard Katz’s excellent, if somewhat dated, introduction to all the electrophysiology you need for Chapter 6 of IPMB.
  41. The Conduction of the Nervous Impulse. Read about the Hodgkin-Huxley model from the pen of Alan Hodgkin himself.
  42. From Neuron to Brain. A modern introduction to neuroscience.
  43. Electricity and Magnetism. This book by Ed Purcell is part of the Berkeley Physics Course. The first of three physics books about electricity and magnetism.
  44. Introduction to Electrodyamics. David Griffiths’s text competes with Purcell’s for my favorite electricity and magnetism book.
  45. Classical Electrodynamics. John David Jackson’s famous graduate-level physics text may be more electricity and magnetism than you want, but how could I leave it off the list?
  46. Galvani’s Spark. A history of neurophysiology.
  47. Shattered Nerves. A fascinating look at using electrical stimulation to compensate for neural injury. A history of neural prostheses.
  48. Bioelectricity: A Quantitative Approach. The first, and probably easiest, of three bioelectricity textbooks.
  49. Bioelectromagnetism. Jaakko Malmivuo and Robert Plonsey’s big book about bioelectricity.
  50. Bioelectricity and Biomagnetism. Another big tome. Ramesh Gulrajani’s alternative to Malmivuo and Plonsey.
  51. The Art of Electronics. In order to understand voltage clamping and other electrophysiological methods, you need to know some electronics. This book is my favorite introduction to the topic. 
  52. Mathematical Handbook of Formulas and Tables. Chapter 6 contains lots of mathematics, and the next three books are references you may want. This Schaum’s Outline contains most of the math you’ll ever need. It’s cheap, light, and easy to use. Keep it handy.
  53. Handbook of Mathematical Functions with Formulas, Graphs and Mathematical Tables. No one would sit down and read this handbook straight through, but “Abramowitz and Stegun” is invaluable as a reference.
  54. Table of Integrals, Series, and Products. “Gradshteyn and Ryzhik” is the best integral table ever. Let the library buy it, but have them keep it in the reference section so you can find it quickly. 
  55. Numerical Recipes. If you want to solve the equations of the Hodgkin-Huxley model, you need to program a computer. This book is great for finding the needed numerical methods.
  56. Numerical Methods that Work. Forman Acton’s book is more chatty than Numerical Recipes, but full of insight.
  57. Machines in our Hearts. Chapter 7 of IPMB examines the heart. Read this history of pacemakers and defibrillators to put it all in perspective.
  58. Cardiac Electrophysiology: From Cell to Bedside. This multi-author, multi-edition work contains everything you always wanted to know about the electrical properties of the heart, but were afraid to ask.
  59. Cardiac Bioelectric Therapy. Another multi-author collection, with several excellent chapters about the bidomain model.
  60. When Time Breaks Down. Art Winfree’s unique analysis of the electrical properties of the heart.
  61. Electric Fields of the Brain. Paul Nunez’s book about the electroencephalogram from the perspective of a physicist.
  62. Iron, Nature’s Universal Element. Why people need iron and animals make magnets.
  63. The Spark of Life. An accessible introduction to electrophysiology and ion channel diseases.
  64. Ion Channels of Excitable Membranes. The definitive textbook about ion channels, by Bertil Hille.
  65. Voodoo Science. Some of the topics in Section 9.10 of IPMB about possible effects of weak electric and magnetic fields make me yearn for this hard-hitting book by Bob Park.
  66. Dynamics: The Geometry of Behavior. Chapter 10 of IPMB covers nonlinear dynamics. This beautiful book introduces dynamics using pictures.
  67. From Clocks to Chaos. Leon Glass and Michael Mackey introduce the idea of a dynamical disease.
  68. Nonlinear Dynamics and Chaos. Steven Strogatz’s classic; my favorite book about nonlinear dynamics.
  69. Mathematical Physiology. An award-winning textbook about applying math to biology.
  70. Mathematical Biology. Another big fine textbook for the mathematically inclined.
  71. The Geometry of Biological Time. A quirky book by Art Winfree, more wide-ranging than When Time Breaks Down.
  72. Data Reduction and Error Analysis for the Physical Sciences. Many of the ideas about least squares fitting discussed in Chapter 11 of IPMB are related to analyzing noisy data.
  73. The Fourier Transform and its Applications. The Fourier transform is the most important concept in Chapter 11. Ronald Bracewell’s book is a great place to learn about it.
  74. Introduction to Membrane Noise. Louis DeFelice’s book explains how to deal with noise.
  75. Naked to the Bone. A historical survey of medical imaging.
  76. Medical Imaging Physics. A book by William Hendee and E Russell Ritenour, at a level similar to IPMB but dedicated entirely to imaging. Also see its partner, Hendee's Radiation Therapy Physics.
  77. Foundations of Medical Imaging. A big, technical book about imaging.
  78. Theoretical Acoustics. Not much biology here, but a definitive survey of acoustics to back up Chapter 13 of IPMB.
  79. Physics of the Body. This book discusses many topics, including hearing.
  80. Musicophilia. An extraordinary book by Oliver Sacks about the neuroscience of hearing.
  81. Quantum Physics of Atoms, Molecules, Solids, Nuclei, and Particles. My choice for a modern physics textbook, with much information about the interaction of light with matter.
  82. The First Steps in Seeing. Robert Rodieck’s incredible book about the physics of vision.
  83. The Optics of Life. This masterpiece by Sonke Johnsen walks you through optics, examining all the biological applications. A great supplement to Chapter 14 of IPMB.
  84. From Photon to Neuron. A study of light, imaging, and vision.
  85. Introduction to Physics in Modern Medicine. Suzanne Amador Kane’s nice introduction to physics applied to medicine, covering many topics in the last half of IPMB.
  86. Introduction to Radiological Physics and Radiation Dosimetry. Frank Herbert Attix wrote the definitive textbook about how x-rays interact with tissue, a topic covered in Chapter 15 of IPMB.
  87. Radiobiology for the Radiologist. The go-to reference for how cells and tissues respond to radiation.
  88. Molecular Biology of the Cell. The classic textbook of cell biology.
  89. Radiation Oncology: A Physicists Eye View. Explains how to treat cancer using radiation.
  90. The Physics of Radiation Therapy. Faiz Khan’s in-depth study of radiation therapy.
  91. The Atomic Nucleus. An classic about nuclear physics, providing background for Chapter 17 of IPMB. You could replace it with one of many modern nuclear physics textbooks.
  92. The Immortal Life of Henrietta Lacks. A fascinating study of how a women treated for cancer using radioactivity ended up providing science with an immortal cell line.
  93. Strange Glow. How radiation impacts society.
  94. The Radium Girls. This book is about women poisoned by radium-containing paint (lip, dip, paint). It reminds us why we study medical physics.
  95. Magnetic Resonance Imaging: Physical Properties and Sequence Design. All you need to know about MRI.
  96. Principles of Nuclear Magnetic Resonance Microscopy. Paul Callaghan’s view of magnetic resonance imaging.
  97. Echo Planar Imaging. Advanced MRI techniques.
  98. Biological Physics. IPMB is not strong in covering physics applied to cellular and molecular biology. Here are three great books to fill that gap.
  99. Cell Biology by the Numbers. I love the quantitative approach to biology.
  100. Physical Biology of the Cell. How physicists view biology. 
Don’t see your favorite listed? Here’s my call to action: Add your recommendations to the comments below.

I didn’t end up going to St. John’s College and studying the Great Books. Instead, I attended a more traditional school, the University of Kansas. I loved KU, and I have no regrets. But sometimes I wonder...

Friday, October 18, 2019

Entry Region and Deviations from Poiseuille Flow

Chapter 1 of Intermediate Physics for Medicine and Biology analyzes viscous flow in a tube, also known as Poiseuille flow. Russ Hobbie and I derive the well-known parabolic distribution of speed: motionless at the wall—the no-slip boundary condition—and maximum at the center. In Section 1.20 we consider departures from the parabolic flow profile.
The entry region causes deviations from Poiseuille flow in larger vessels. Suppose that blood flowing with a nearly flat velocity profile enters a vessel, as might happen when blood flowing in a large vessel enters the vessel of interest, which has a smaller radius. At the wall of the smaller vessel, the flow is zero. Since the blood is incompressible, the average velocity is the same at all values of x, the distance along the vessel. (We assume the vessel has a constant cross-sectional area.) However, the velocity profile v(r) changes with distance x along the vessel. At the entrance to the vessel (x = 0), there is a very abrupt velocity change near the walls. As x increases, a parabolic velocity profile is attained. The transition or entry region is shown in Fig. 1.35. In the entry region, the pressure gradient is different from the value for Poiseuille flow. The velocity profile cannot be calculated analytically in the entry region. Various numerical calculations have been made, and the results can be expressed in terms of scaled variables (see, for example, Cebeci and Bradshaw 1977). The Reynolds number used in these calculations was based on the diameter of the pipe, D = 2Rp, and the average velocity. The length of the entry region is

L = 0.05DNR,D = 0.1RpNR,D = 0.2RpNR,Rp.       (1.63)
IPMB’s Figure 1.35 is shown below.

Figure 1.35 from Intermediate Physics for Medicine and Biology.

This figure first appeared in the 3rd edition of IPMB, for which Russ was sole author. I got to wondering how he created it.

Momentum Transfer in Boundary Layers, by Tuncer Cebeci and Peter Bradshaw, superimposed on Intermediate Physics for Medicine and Biology.
Momentum Transfer in
Boundary Layers
by Cebeci and Bradshaw.
I checked out the book Momentum Transfer in Boundary Layers, by Cebeci and Bradshaw (1977), through interlibrary loan and found the part about entrance-region flow in their Section 5.7.1. They write
Figures 5.9 and 5.10 show the velocity profiles, u/u0, and the dimensionless centerline (maximum) velocity, uc/u0, as functions of 2x*/Rd in the entrance region of a pipe. Here x* = x/r0 and Rd = u0d/ν. Figure 5.10 also shows the measured values of the centerline velocity obtained by Pfenninger (1951). According to the results of Fig. 5.10, the centerline velocity has almost reached its asymptotic value of 2 at 2x*/Rd = 0.20. Thus the entrance length for a laminar flow in a circular pipe is

le/d = Rd/20       (5.7.12)
Their Fig. 5.9 is

A photograph of Figure 5.9 from Momentum Transfer in Boundary Layers, by Tuncer Cebeci and Peter Bradshaw (1977).
A photograph of Figure 5.9 from Momentum Transfer
in Boundary Layers
, by Cebeci and Bradshaw (1977).
I believe this is the figure Russ used to create his drawing. Clever guy that he is, he seems to have taken the traces, rotated them by 90°, and reflected them across the centerline so they extend from the upper to lower wall. The variable r in their Fig. 5.9 is the distance from the wall, and r0 is the radius of the vessel, so r/r0 = 1 at the center of the vessel and r/r0 = 0 at the wall (don’t ask me why they defined r in this odd way); x* is x/r0, or the distance along the length of the vessel in terms of the vessel radius; ν is the kinematic viscosity, equal to the coefficient of viscosity η divided by the density ρ; and finally Rd is the Reynolds number, defined using the vessel diameter, which Russ and I call NR,D.

At the vessel entrance (x* = 0), the flow is uniform across its cross section with speed u0. The curve corresponding to 2x*/Rd = 0.531 looks almost exactly like Poiseuille flow, with the shape of a parabola and a maximum speed equal to 2u0. For the curve 2x*/Rd = 0.101 the flow is close to, but not exactly, Poiseuille flow. Cebeci and Bradshaw somewhat arbitrarily define the entrance length as corresponding to 2x*/Rd = 0.2.

The example that Russ analyzed in the caption to Fig. 1.35 corresponds to a large vessel such as the brachial artery in your upper arm. A diameter of 4 mm and an entrance length of 240 mm implies a Reynolds number of Rd = 1200. In this case, the entrance length is much greater than the diameter, and is similar to the length of the vessel. If we consider a small vessel like a capillary, however, we get a different picture. A typical Reynolds number for a capillary would be du0ρ/η = (8 × 10-6 m)(0.001 m/s)(1000 kg/m3)/(3 × 10-3 kg/m/s) = 0.0027, which implies an entrance length of about one nanometer. In other words, the parabolic flow distribution is established almost immediately, over a distance much smaller than the vessel’s length and even its radius. The entrance length is negligible in small vessels like capillaries.

Tuncer Cebeci is a Turkish-American mechanical engineer who worked for the Douglas Aircraft Company and was chair of the Department of Aerospace Engineering at California State University Long Beach. He has authored many textbooks in aeronautics, and developed the Cebeci-Smith model used in computational fluid dynamics. Peter Bradshaw was a professor in the Department of Aeronautics at the Imperial College London and then at Stanford, and is a fellow of the Royal Society. He developed the “Bradshaw Blower,” a type of wind tunnel use to study turbulent boundary layers.

Cebeci and Bradshaw describe why they wrote Momentum Transfer in Boundary Layers in their preface.
This book is intended as an introduction to fluid flows controlled by viscous or turbulent stress gradients and to modern methods of calculating these gradients. It is nominally self-contained, but the explanations of basic concepts are intended as review for senior students who have already taken an introductory course in fluid dynamics, rather than for beginning students. Nearly all stress-dominated flows are shear layers, the most common being the boundary layer on a solid surface. Jets, wakes, and duct flows are also shear layers and are discussed in this volume. Nearly all modern methods of calculating shear layers require the use of digital computers. Computer-based methods, involving calculations beyond the reach of electomechanical desk calculators, began to appear around 10 years ago... With the exception of one or two specialist books... this revolution has not been noticed in academic textbooks, although the new methods are widely used by engineers.
This post illustrates how IPMB merely scratches the surface when explaining how physics impacts medicine and biology. Behind each sentence, each figure, and each reference is a story. I wish Russ and I could tell them all.

Friday, October 11, 2019

A Blog as Ancillary Material for a Physics Textbook

Today I’m attending the Fall 2019 Meeting of the Ohio-Region Section of the American Physical Society and the Michigan Section of the American Association of Physics Teachers, held at Kettering University in Flint, Michigan. Flint is just 45 minutes north of Oakland University, so this is a local meeting for me.

At the meeting I’ll present a poster titled “A Blog as Ancillary Material for a Physics Textbook.” As you can probably guess, the blog I’m referring to is the one you’re reading now. My poster is shown below.

My poster for the Fall 2019 Meeting of the Ohio-Region Section of the American Physical Society and the Michigan Section of the American Association of Physics Teachers.
My poster for the Fall 2019 Meeting of the Ohio-Region Section of the American Physical Society
and the Michigan Section of the American Association of Physics Teachers
The poster begins with my meeting abstract.
Nowadays, textbooks come with many ancillary materials: solution manuals, student guides, etc. A unique ancillary feature is a blog. A blog allows you to keep your book up-to-date, to expand on ideas covered only briefly in your book, to point to other useful learning materials such as websites, articles and other books, and to interact directly with students using your book.
Then I address the question “Why write a blog associated with a textbook?” My reasons are to
  • Keep your book up-to-date. 
  • Present background material. 
  • Offer links to related websites, videos, and other books. 
  • Try out new material for future editions. 
  • Provide a direct line of communication between you and your readers. 
  • Reach out to students from other states and countries who are interested in your topic but don’t have your book (yet). 
  • Have fun. 
  • Increase book sales!
Next I discuss the blog for IPMB.
I am coauthor with Russell Hobbie of the textbook Intermediate Physics for Medicine and Biology (5th edition, Springer, 2015) My blog can be found at The blog began in 2007. I post once a week, every Friday morning, with over 600 posts so far. I also share the weekly posts on the book’s Facebook page. I use the blogger software, which is free and easy to learn;
After that, I describe my different types of posts.
  • Useful for Instructors: Posts that will be especially helpful to faculty teaching from your book, such as sample syllabi, information about prerequisites, and links. 
  • Book Reviews: Reviews of books that are related to mine. 
  • Obituaries: Stories of famous scientists who have died recently. 
  • New Homework Problems: I often post new homework problems that instructors can use in class or on exams. 
  • My Own Research: Stories from my own research, to serve as examples of how to apply the material in the textbook. 
  • Lots of Math: Some of my posts are very mathematical, and I warn the reader. 
  • Personal Favorites: About 10% of my posts I list as personal favorites. These are particularly interesting, especially well written, or sometimes autobiographical.
Finally, I provide a sample post. I chose one of my favorites about craps, published on August 10, 2018.

A big thank you to my graduate student Dilmini Wijesinghe, who helped me design the poster. She’ll be at the meeting too, presenting another poster about biomechanics and mechanotransduction. But that’s another story.

Friday, October 4, 2019

Spiral MRI

In Chapter 18 of Intermediate Physics for Medicine and Biology, Russ Hobbie and I discuss a type of magnetic resonance imaging called echo-planar imaging.
In EPI the echoes are not created using π pulses. Instead, they are created by dephasing the spins at different positions along the x axis using a Gx gradient, and then reversing that gradient to rephase the spins, as shown in Fig. 18.32. Whenever the integral of Gx(t) is zero, the spins are all in phase and the signal appears. A large negative Gy pulse sets the initial value of ky to be negative; small positive Gy pulses (“blips”) then increase the value of ky for each successive kx readout. Echo-planar imaging requires strong gradients—at least five times those for normal studies—so that the data can be acquired quickly. Moreover, the rise and fall-times of these pulses are short, which induces large voltages in the coils. Eddy currents are also induced in the patient, and it is necessary to keep these below the threshold for neural activation. These problems can be reduced by using sinusoidally-varying gradient currents. The engineering problems are discussed in Schmitt et al. (1998); in Vlaardingerbroek and den Boer (2004); and in Bernstein et al. (2004).
Echo-Planar Imaging: Theory, Technique and Application, edited by Schmitt, Stehling, and Turner, superimposed on Intermediate Physics for Medicine and Biology.
Echo-Planar Imaging:
Theory, Technique and Application
edited by Schmitt, Stehling, and Turner.
To learn more about “sinusoidally-varying gradient currents,” I consulted the first of the three references, Echo-Planar Imaging: Theory, Technique and Application, edited by Franz Schmitt, Michael Stehling, and Robert Turner (Springer, 1998). In his chapter on the “Theory of Echo-Planar Imaging,” Mark Cohen discusses a spiral echo-planar pulse sequence in which the gradient fields have the unusual form Gx = Go t sin(ωt) and Gy = Go t cos(ωt).

Below I show the pulse sequence, which you can compare with the echo-planar imaging sequence in Fig. 18.32 of IPMB if you have the book by your side (don’t you always keep IPMB by your side?). The top two curves are the conventional slice selection sequence: a gradient Gz (red) in the z direction is applied during a radiofrequency π/2 pulse Bx (black), which rotates the spins into the x-y plane. The unconventional readout gradient Gx (blue) varies as an increasing sine wave. It produces a gradient echo at times corresponding approximately to the extrema of the Gx curve (excluding the first small positive peak). The phase encoding gradient Gy (green), an increasing cosine wave, is approximately zero at the echo times, but will shift the phase and therefore impact the amplitude of the echo.
A pulse sequence for spiral echo-planar imaging, based on Fig. 14 of “Theory of Echo-Planar Imaging,” by Mark Cohen in Echo-Planar Imaging: Theory, Technique and Application, edited by Schmitt, Stehling, and Turner.
A pulse sequence for spiral echo-planar imaging,
based on Fig. 14 of “Theory of Echo-Planar Imaging,”
by Mark Cohen.

If you look at the output in terms of spatial frequencies (kx, ky), you find that the echos correspond to points along an Archimedean spiral.

The spiral echo-planar imaging technique as viewed in frequency space, based on Fig. 13 of “Theory of Echo-Planar Imaging,” by Mark Cohen, in Echo-Planar Imaging: Theory, Technique and Application, edited by Schmitt, Stehling, and Turner.
The spiral echo-planar imaging technique as viewed in frequency space,
based on Fig. 13 of “Theory of Echo-Planar Imaging,” by Mark Cohen.

Spiral echo-planar imaging has some drawbacks. Data in k-space is not collected over a uniform array, so you need to interpolate onto a square grid before performing a numerical two-dimensional inverse Fourier transform to produce the image. Moreover, you get blurring from chemical shift and susceptibility artifacts. The good news is that you eliminate the rapid turning on and off of gradient pulses, which reduces eddy currents that can cause their own image distortions and possibly neural stimulation. So, spiral imaging has advantages, but the pulse sequence sure looks weird.

Echo-planar imaging in general, and spiral imaging in particular, are very fast. In his chapter on “Spiral Echo-Planar Imaging,” Craig Meyer discusses his philosophy about using EPI.
Spiral scanning is a promising alternative to traditional EPI. The properties of spiral scanning stem from the circularly symmetric nature of the technique. Among the attractive properties of spiral scanning are its efficiency and its good behavior in the presence of flowing material; the most unattractive property is uncorrected inhomogeneity leads to image blurring. Spiral image reconstruction can be performed rapidly using gridding, and there are a number of techniques for compensating for inhomogeneity. There are good techniques for generating efficient spiral gradient waveforms. Among the growing number of applications of spiral scanning are cardiac imaging, angiography, abdominal tumor imaging, functional imaging, and fluoroscopy.

Spiral scanning is a promising technique, but at the present it is still not in routine clinical use. There are many theoretical reasons why spiral scanning may be advantageous for a number of clinical problems, and initial volunteer and clinical studies have yielded very promising results for a number of applications. Still, until spiral scanning is established in routine clinical use, some caution is warranted about proclaiming it to be the answer for any particular question.