The Hodgkin and Huxley Macarena

Last week, Oakland University had the honor of hosting James Keener, Distinguished Professor of Mathematics at the University of Utah. He gave a delightful talk as part of our Quantitative Biology lecture series. His book Mathematical Physiology won the 1998 Association of American Publishers award for the Best New Title in Mathematics. Somehow, Russ Hobbie and I failed to cite this book in the 4th edition of Intermediate Physics for Medicine and Biology. We did, however, cite Keener’s work with Sasha Panfilov on the three-dimensional propagation of electrical activity in the heart. You can learn more about Keener's career and research in a Society of Mathematical Biology newsletter.

One of my favorite features of Keener’s website is his instructions on how to do the Hodgkin-Huxley Macarena. A photograph shows a large group of researchers doing this dance at the Cold Spring Harbor Laboratory last summer. To make sense of the HH Macarena, image that the left arm is the sodium channel “m” gate, and the right arm is the “h” gate, as discussed in Chapter 6 of Intermediate Physics for Medicine and Biology. (Note: I assume the picture on Keener's website shows a person facing us, so that her left arm is on my right side). Initially h is open (right arm vertical) and m is closed (left arm horizontal). During an action potential, m opens (step 2 and 3) and then h closes (step 4 and 5) and the “nerve” becomes refractory. Since the h gate is slower than the m gate, perhaps you should imagine having a lead weight wrapped around your right wrist as you do the HH Macarena. Unfortunately, Keener does not yet have a video posted (with music), but perhaps we can encourage him to make one. If readers of Introductory Physics for Medicine and Biology know only one dance, it should be the Hodgkin-Huxley Macarena (although the ECG dance is a close second).

Note added in 2019: Watch Keener lead the HH Macarena on Youtube!

Watch James Keener do the Hodgkin-Huxley Macarena. 

https://www.youtube.com/watch?v=YpKy_mF-hj4

Measurement of Blood Pressure

Last week I was in the hospital with pneumonia. I’m fine now, thank you, but I was there three days, and last week’s blog entry was posted from my hospital bed (doesn’t everyone bring their laptop with them to the hospital?).

A hospital is a rich environment for a lover of physics applied to medicine. One thing that particularly caught my eye is their way of measuring blood pressure. I got interested when, after a cuff was inflated around my arm, instead of feeling the familiar slow steady release of pressure as the nurse listened to my arm (that’s the way they still do it at the blood drive), this cuff started gripping and ungripping my arm in a strange and almost belligerent way. I had several opportunities to observe the measurement of blood pressure, and I decided that it would be a good topic for this blog.

First, a bit about the basic physics and physiology. In Chapter 1 of the 4th edition of Intermediate Physics for Medicine and Biology, Russ Hobbie and I write

As the heart beats, the pressure in the blood leaving the heart rises and falls. The maximum pressure during the cardiac cycle is the systolic pressure. The minimum is the diastolic pressure. (A blood pressure reading is in the form systolic/diastolic, measured in torr.)

The Human Body,
by Isaac Asimov.

To explain how blood pressure is measured traditionally, I will turn to my hero Isaac Asimov’s book The Human Body (I quote from my 1963 paperback copy).

When blood is forced into the aorta, it exerts a pressure against the walls that is referred to as blood pressure. This pressure is measured by a device called a sphygmomanometer (sfig’ moh-ma-nom’ i-ter; “to measure the pressure of the pulse” [Greek]), an instrument which, next to the stethoscope, is surely the darling of the general practitioner. The sphygmomanometer consists of a flat rubber bag some 5 inches wide and 8 inches long. This is kept in a cloth bag that can be wrapped snugly about the upper arm, just over the elbow. The interior of the rubber bag is pumped up with air by means of a little rubber bulb fitted with a one-way valve. As the bag is pumped up, the pressure within it increases and that pressure is measured by a small mercury manometer to which the interior of the bag is connected by a second tube.

As the bag is pumped up, the arm is compressed until, at a certain point, the pressure of the bag against the arm equals the blood pressure. At that point, the main artery of the arm is pinched closed and the pulse in the lower arm (where the physician is listening with a stethoscope) ceases.

Now air is allowed to escape from the bag and, as it does so, the level of mercury in the manometer begins to fall and blood begins to make its way through the gradually opening artery. The person measuring the blood pressure can hear the first weak beats and the reading of the manometer at that point is the systolic pressure, for those first beats can be heard only during systole, when the blood pressure is highest. As the air continues to escape and the mercury level to fall, there comes a characteristic quality of the beat that indicates the diastolic pressure; the pressure when the heart is relaxed.

What I experienced in the hospital was different than Asimov’s explanation, and was more automated. I’m having a difficult time finding good technical literature about automated blood pressure monitors, but I’m going out on a limb here and guess how they work. In the hospital there was an inflatable cuff around my forearm, but there was no one listening with a stethoscope. That person is replaced by an optical device (similar to a pulse oximeter, see Section 14.6, Biological Applications of Infrared Scattering, in Intermediate Physics for Medicine and Biology) clipped to my finger, which presumably can detect flow. The cuff then inflates and flow is measured, the cuff changes the pressure to a new level and flow is measured again, etc. This all happens rapidly; each new cuff pressure level was maintained for at most one second, implying that only a single heart beat sufficed to make the flow measurement. The cuff and optical device are attached to a computer, and the computer made the decision about when to increase or decrease pressure, and what values to use. It seemed to be doing some sort of binary search, first going above and then below the level that allows flow. The algorithm slowed as the threshold level was approached, and I suspect that in such cases several heartbeats were required to accurately determine if flow occurred. The device also output the pulse rate and, if my memory serves me well, blood oxygenation level. Both were recorded after the cuff had completed its measurement of blood pressure.

I like this method. It does not depend on someone carefully listening for delicate blood flow noises (also known as Korotkoff sounds). In fact, while the blood pressure was being measured, the nurse was usually checking my IV line or doing some other task; the method is truly automated. One time, I did a little experiment and fidgeted with the finger clip during the measurement. The nurse got a fright when she saw my blood pressure up around 220/150. But a quick repeat measurement (during which I behaved myself) revealed that my blood pressure was actually normal (about 110/70). I suspect that the use of the binary search and pulse oximeter provides a more accurate measurement than does the traditional method, although I have no evidence to support that opinion. Automated blood pressure recording is an excellent example of how physics and engineering can contribute to medicine and biology.

Decay Plus Input at a Constant Rate

Section 2.7 of the 4th edition of Intermediate Physics for Medicine and Biology is titled Decay Plus Input at a Constant Rate. When I taught Biological Physics last fall (using for my textbook—you guessed it—Intermediate Physics for Medicine and Biology), I found that we kept coming back to this section over and over. Russ Hobbie and I write

Suppose that in addition to the removal of y from the system at a rate –by, y enters the system at a constant rate a, independent of y and t. The net rate of change of y is given by

dy/dt = a – by…  (2.24)

The solution is

y = a/b (1 –  e^−bt).

One of the first applications of this equation is to the speed of an animal falling under the force of gravity and air friction (Chapter 2, Problem 28). One can show that the terminal speed of the animal is a/b. If further one proves that the gravitational force (a) is proportional to volume, and the frictional force (−by) is proportional to surface area, then the implication is that larger animals fall faster than smaller ones. This led to Haldane’s famous quote “You can drop a mouse down a thousand-yard mine shaft: and arriving at the bottom, it gets a slight shock and walks away. A rat is killed, a man is broken, a horse splashes.”

We see this equation again in Chapter 3 when analyzing Newton’s law of cooling (Problem 45). The surrounding temperature plays the role of a, and the exponential cooling from convection is represented by a term like −by. The solution to the resulting differential equation is just the exponential solution presented in Sec. 2.7.

In Section 5.7 about the artificial kidney, the equation arises again in governing the concentration of solute in the blood when the concentration of the solute in the dialysis fluid is a constant. As with the animal falling, the ratio of blood volume V to membrane area S is a key parameter.

The equation appears twice in Chapter 6 (Impulses in Nerve and Muscle Cells). First, the gate variables m, h, and n in the Hodgkin and Huxley model obey this same differential equation. In the voltage-clamp case, the gates approach their steady-state values exponentially. Then, Problem 35 analyzes electrical stimulation of a space-clamped passive axon using a constant current, and finds that the transmembrane potential approaches its steady-state value exponentially also. This result is used to derive two quantities with colorful names—rheobase and chronaxie—that are important in neural stimulation.

By Chapter 10, some of the students have almost forgotten the equation when it appears again in the study of feedback loops (particularly Section 10.4). I am sure that the equation would appear even more times, except my one-semester class ended with Chapter 10.

Some might wonder why Intermediate Physics for Medicine and Biology contains an entire chapter (Chapter 2) about exponential growth and decay. I believe that the way we are constantly returning to the concepts introduced in Chapter 2 justifies why we organize the material the way we do. In fact, Chapter 2 has always been one of my favorite chapters in Intermediate Physics for Medicine and Biology.

Charles Dickens: Medical Physicist?

The 200th anniversary of the birth of Charles Dickens occurs this week (he was born February 7, 1812). I am a big Dickens fan, so I had to fit him into this week’s blog entry somehow. It is not easy, since there is little overlap between Dickens’ novels and the 4th edition of Intermediate Physics for Medicine and Biology. But let us try.

Great Expectations,
by Charles Dickens.

Dickens’ life spanned an incredibly productive era of Victorian science in England. He was born the same year as English Chemist Humphry Davy published his Elements of Chemical Philosophy. Dickens’ birth fell almost exactly halfway between the births of the two greatest of 19th century British physicists: Michael Faraday (September 1791) and James Maxwell (November 1831). Just as Maxwell was publishing his eponymous Maxwell’s equations, Dickens was publishing Great Expectations. The physician John Snow was born one year after Dickens. It was Snow who famously traced the source of the 1854 cholera epidemic to the Broad Street pump in London (read more about this story in The Ghost Map by Steven Johnson). Dickens was born just two years after the birth of Charles Darwin, and On The Origin of Species appeared almost simultaneously with Dickens’ masterpiece A Tale of Two Cities. William Thomson (Lord Kelvin) was 12 years younger than Dickens. He formulated his version of the second law of thermodynamics in 1851, soon after Dickens published David Copperfield.

David Copperfield,
by Charles Dickens.

A young Charles was working long hours at Warren’s Blacking Warehouse when the first issue of the British medical journal The Lancet appeared in 1823. Dickens published his first story the year after Faraday proposed his vision of electric and magnetic fields, and he got married and published his first novel (The Pickwick Papers) in 1836, the year Darwin returned from his voyage on the Beagle. Martin Chuzzlewit came out in 1843, the same year James Joule determined the mechanical equivalent of heat. Dickens traveled to France and Italy the year that the prominent English chemist John Dalton died in England. His last complete novel, Our Mutual Friend, appeared in 1865, the year before the first transatlantic telegraph cable was laid (for more about this fascinating story, read A Thread Across the Ocean by John Gordon). Kelvin developed the cable equation to govern the transmission of signals over this telegraph line, and the same equation is used nowadays to describe nerve axons. An elderly Dickens came to the United States for a reading tour in 1867, the year English surgeon Joseph Lister pioneered the use of antiseptic to sterilize surgical instruments. Charles Dickens died of a stroke in 1870—leaving the Mystery of Edwin Drood unfinished—just a few months before the birth of the greatest experimental physicist since Faraday, Ernest Rutherford.

A Tale of Two Cities,
by Charles Dickens.

The medical literature contains several studies of how medicine was portrayed in Dickens’ books. Howard Markel writes about “Charles Dickens and the Art of Medicine” in the Annals of Internal Medicine (Volume 101, Pages 408–411, 1984).

Charles Dickens, the novelist, humanist, and social reformer, was a keen observer of all the characteristics of the people in his novels. Dickens observed physicians and visited hospitals so that he could record various illnesses and diseases of people he met during his life. Dickens also worked for many public health reforms in Victorian England. The author used his observations of sick people in many of his novels and produced several accurate descriptions of disease, including Ménière's disorder and acute leukemia.

Bleak House,
by Charles Dickens.

The article analyzes how, in Bleak House, Phil Squod (who was always “shoulding his way along walls”) demonstrated symptoms consistent with “dysfunction of the vestibular nerve…most likely Meniere’s disorder.” In Dombey and Son, the symptoms of young Paul Dombey “resemble those of a child with an acute form of leukemia.”

Kerrie Schoffer and John O’Sullivan focus on movement disorders in their study of Charles Dickens in the Journal of Clinical Neuroscience (Volume 13, Pages 898–901, 2006)

Nineteenth-century Victorian novelists played an important role in developing our understanding of medicine and illness. With the eye of an expert clinician, Charles Dickens provided several detailed accounts of movement disorders in his literary works, many of which predated medical descriptions. His gift for eloquence, imagery, and precision attest not only to the importance of careful clinical observation, but also provide an insightful and entertaining perspective on movement disorders for modern students of neuroscience.

Pickwick Papers,
by Charles Dickens.

So is Dickens a medical physicist? I guess not. But he was a great writer. My favorite Dickens book is A Christmas Carol; I read it every Christmas. I reread A Tale of Two Cities during my Paris trip two years ago (“…It is a far, far better thing that I do, than I have ever done; it is a far, far better rest that I go to than I have ever known.”). I enjoyed Bleak House a few years ago, although it took me a long time to plow through that 818 page tome. I love Dickens’ characters, like the Artful Dodger in Oliver Twist, and Wilkins Micawber in David Copperfield. What will be my next Dickens book? I haven’t read Nicholas Nickleby yet; I think it will be next.

The Intermediate Physics for Medicine and Biology Tourist

Over the Christmas break I was browsing through the Guidebook for the Scientific Traveler: Visiting Physics and Chemistry Sites Across America, and it got me to wondering what sites a reader of the 4th edition of Intermediate Physics for Medicine and Biology might want to visit. Apparently having too much time on my hands, I devised a trip through the United States for our readers. (Perhaps I’ll prepare an international edition later.) The trip starts and ends in Rochester, Michigan, where I work, but the path consists of a large circle and you can begin anywhere. I have not visited all these places, but I know enough about them to suspect you would enjoy them all. Tell me if I have forgotten any important sites. Happy travels!

• Oakland University in Rochester, Michigan. OU is home to Intermediate Physics for Medicine and Biology (IPMB) coauthor Brad Roth, in the Department of Physics. Here Roth collaborated with Russ Hobbie to prepare the 4th edition of IPMB.
• The University of Chicago in Chicago, Illinois. The elementary charge (the magnitude of the charge of an electron, mentioned in IPMB in Chapter 3 and many times later) was first measured accurately by Robert Millikan at the University of Chicago using his famous oil drop experiment. The American Physical Society has an initiative to present commemorative plaques at important sites in the history of physics. Be sure to visit the Millikan plaque. You can see the original equipment used by Millikan at Chicago’s wonderful Museum of Science and Industry. Chapter 1 of IPMB cites the book Powers of Ten by Phillip and Phylis Morrison and the office of C. and R. Eames. The book is centered on a couple picnicking in Chicago, near Soldier Field and the Shedd Aquarium. Be sure to stop there, with your copy of Powers of Ten in hand.
• Morrison, Illinois. Robert Millikan was born in Morrison, and a downtown park in this small town about 120 miles west of Chicago bears his name (although there is no sign or marker to indicate it). IPMB coauthor Brad Roth grew up in Morrison.
• University of Minnesota, in Minneapolis, Minnesota. IPMB’s author Russ Hobbie worked at the University of Minnesota for years, and remains an emeritus faculty member in the Department of Physics and Astronomy. Stop by a visit him in nearby Saint Paul. While in Minneapolis, be sure to visit the Bakken Museum, perhaps the only museum in the country dedicated entirely to electricity and magnetism, and especially bioelectricity and biomagnetism, as discussed in Chapters 6–9 of IPMB. Earl Bakken was one of the founders of the medical device company Medtronic. Stop by at Medtronic's nearby Mounds View Bakken Education Center.
• University of California Berkeley, in Berkeley, California. The cyclotron, crucial for nuclear medicine (see Chapter 17 of IPMB), was invented by Ernest Lawrence at UC Berkeley. See the APS plaque commemorating this invention. Material from a cyclotron in Lawrence’s lab led to the discovery of technetium, an element with no stable isotopes that is widely used in nuclear medicine imaging and is discussed at length in Chapter 17 of IPMB. While in the San Francisco area, visit Stanford University where Felix Bloch performed his pioneering experiments in nuclear magnetic resonance (Chapter 18, IPMB), and where Mark Denny has his Biomechanics Laboratory (Denny’s book Air and Water is cited often in IPMB). Don’t forget to visit the Exploratorium.
• California Institute of Technology, in Pasadena, California. Carl Anderson discovered positrons while working at CalTech (see the APS plaque for Anderson’s discovery). Positrons are used in positron emission tomography (PET) imaging (Chapter 17, IPMB). Also from Cal Tech in Richard Feynman, whose Lectures on Physics are cited in IPMB.
• Washington University in St Louis, in St Louis, Missouri. Arthur Compton performed his groundbreaking experiments on Compton Scattering (Chapter 15, IPMB) at Washington University. See the APS plaque commemorating his work. Their biomedical engineering department now is home to many leading researchers in cardiac electrophysiology, including post doc Debbie Janks, a reader and often a commenter on the IPMB facebook group and blog.
• Vanderbilt University, in Nashville, Tennessee. IPMB coauthor Brad Roth attended graduate school at Vanderbilt, working with John Wikswo in the Department of Physics and Astronomy. There, they measured the magnetic field of a single nerve axon, as described in Chapter 8 of IPMB. IPMB author Russ Hobbie was a Visiting Professor at Vanderbilt in 1999. Max Delbruck, an early biological physicist who contributed to our understanding of genetics, performed many of his Nobel Prize winning experiments at Vanderbilt.
• Duke University, in Durham, North Carolina. Duke’s Department of Biomedical Engineering has been the home of many leaders in bioelectricity and cardiac electrophysiology, including Robert Plonsey, whose books are often cited often in IPMB. The Duke Biology Department is home to Steven Vogel, author of Life in Moving Fluids, another book cited in IPMB. Be sure to find the statue of former Duke physiologist Knut Schmidt-Nielsen studying a camel, which graces the Duke campus.
• National Institutes of Health, in Bethesda, Maryland. No tour of biomedical facilities in the United States would be complete without stopping at the NIH campus in Bethesda. Be sure to visit the Stetton Museum of Medical Research in Building 10: the Warren Grant Magnuson Clinical Center. Stop by Building 13 and see where IPMB coauthor Brad Roth worked on transcranial magnetic stimulation (IPMB, Chapter 8) and where his friend Peter Basser invented MRI Diffusion Tensor Imaging (IPMB, Chapter 18) (Peter’s office is still there; stop by and say hi). You could spend a week visiting all the historic medical research sites in the Washington DC area.
• Yale University, in New Haven, Connecticut. Visit Yale and walk the path of the early American physicist Josiah Williard Gibbs, whose work on chemical thermodynamics is discussed in Chapter 3 of IPMB, including the Gibbs Free Energy. See the APS plaque commemorating Gibbs’ work.
• Framingham, Massachusetts. Visit the town that contributed more to uncovering the diseases of the heart than any other, through the Framingham Heart Study. Framingham is one of the few locations mentioned explicitly in IPMB, in Chapter 2.
• Harvard University, in Cambridge, Massachusetts. Edward Purcell performed his early experiments on nuclear magnetic resonance at Harvard, which resulted in the Nobel Prize. He is also author of a beloved paper cited in IPMB, “Life at Low Reynolds Number.” Visit the site of the Harvard cyclotron, where IPMB author Russ Hobbie was a graduate student, and where Allan Cormack worked on the mathematical methods underlying computed tomography (IPMB, Chapter 16). Visit the nearby Massachusetts Institute of Technology Museum, containing a collection of artifacts related to science and technology (IPMB author Russ Hobbie obtained his undergraduate degree from MIT). While near Boston, visit the Museum of Science, especially their Theater of Electricity.
• Woods Hole Marine Biological Laboratories, in Woods Hole, Massachusetts. At Woods Hole, Kenneth Cole developed the voltage clamp method (Chapter 6, IPMB), which played an important role in the discovery of how nerves conduct action potentials. Stop by the Visitors Center and take a tour.
• Oakland University, in Rochester Michigan. Back to the starting point. Be sure to stop by Brad Roth’s office (166 Hannah Hall) and see his collection of all four editions of IPMB sitting on his bookshelf.

Radiation Risks from Medical Imaging Procedures

On December 13, 2011 the American Association of Physicists in Medicine issued a position statement (PP 25-A) about radiation risks from medical imaging procedures. It is brief, and I will quote it in its entirety:

The American Association of Physicists in Medicine (AAPM) acknowledges that medical imaging procedures should be appropriate and conducted at the lowest radiation dose consistent with acquisition of the desired information. Discussion of risks related to radiation dose from medical imaging procedures should be accompanied by acknowledgement of the benefits of the procedures. Risks of medical imaging at effective doses below 50 mSv for single procedures or 100 mSv for multiple procedures over short time periods are too low to be detectable and may be nonexistent. Predictions of hypothetical cancer incidence and deaths in patient populations exposed to such low doses are highly speculative and should be discouraged. These predictions are harmful because they lead to sensationalistic articles in the public media that cause some patients and parents to refuse medical imaging procedures, placing them at substantial risk by not receiving the clinical benefits of the prescribed procedures.

AAPM members continually strive to improve medical imaging by lowering radiation levels and maximizing benefits of imaging procedures involving ionizing radiation.

News articles discussing this position statement appeared on the Inside Science and Physics Central websites.

The 4th edition of Intermediate Physics for Medicine and Biology discusses the risk of radiation in Section 16.13. Dose is the energy deposited by radiation in tissue per unit mass, and its unit of a gray is equal to one joule per kilogram. A sievert is also a J/kg, but it differs from a gray in that it includes a weighting factor that measures the relative biological effectiveness of the radiation, and is used to measure the equivalent dose (although often, including in the remainder of this blog entry, people get a little sloppy and just say “dose” when they really mean “equivalent dose”). A sievert is a rather large dose of radiation, and when discussing medical imaging or background radiation exposure, scientists often use the millisievert (mSv).

Table 16.7 of Intermediate Physics for Medicine and Biology lists typical radiation doses for many medical imaging procedures. For example, a simple chest X ray has a dose of about 0.06 mSv, and a CT scan is 1–10 mSv. The average radiation dose from all natural (background) sources is given in Table 16.6 as 3 mSv per year (primarily from exposure to radon gas). A pilot logging 1000 hours in the air per year receives on the order of 7 mSv annually.

Perhaps the most interesting sentence in the AAPM position statement is “Risks of medical imaging at effective doses below 50 mSv for single procedures or 100 mSv for multiple procedures over short time periods are too low to be detectable and may be nonexistent.” To me, the phrase “may be nonexistent” seems to cast doubt on the linear nonthreshold model often used when discussing the risk of low-dose radiation. Russ Hobbie and I discuss this model in Intermediate Physics for Medicine and Biology.

In dealing with radiation to the population at large, or to populations of radiation workers, the policy of the various regulatory agencies has been to adopt the linear-nonthreshold (LNT) model to extrapolate from what is known about the excess risk of cancer at moderately high doses and high dose rates, to low doses, including those below natural background.

We also consider other ideas, such as a threshold model for radiation effects and even hormesis, the idea that very low doses of radiation may be beneficial. The controversy over the biological effects of low-dose radiation is fascinating, but as best I can tell the validity of each of these models remains uncertain; getting accurate data when measuring tiny effects is difficult. I assume this is what motivates the word “may” in the phrase “may be nonexistent” from the position statement (although, I hasten to add, I have no inside information about the intent of the authors of the position statement—I’m just guessing). In our book, Russ and I come to a conclusion that is fairly consistent with the AAPM position statement.

Some investigators feel that there is evidence for a threshold dose, and that the LNT model overestimates the risk [Kathren (1996); Kondo (1993); Cohen (2002)]. Mossman (2001) argues against hormesis but agrees that the LNT model has led to ‘enormous problems in radiation protection practice’ and unwarranted fears about radiation.

Although I find the AAPM position statement to have a slightly condescending tone, I applaud it primarily as an antidote for those “unwarranted fears about radiation.” My impression is that many in the general public have a fear of the word radiation that borders on the irrational, stemming from a lack of knowledge about the basic physics governing how radiation interacts with tissue, and a poor understanding of risk analysis. I hope the AAPM position statement (and, immodestly, our textbook) helps change those concerns from irrational fears to reasoned and fact-based assessment. I would not discourage analysis of public safety, but I definitely encourage an intelligent and scientific analysis.

Open Access

The journal Medical Physics is one of the leading publications in the field of physics applied to medicine. Recently, many articles in Medical Physics have become free to everyone (open access) (see the editorial here). This is great news to those readers of the 4th edition of Intermediate Physics for Medicine and Biology who do not have a personal or institutional subscription to Medical Physics. Some of the articles that can now be downloaded for free are the ever-popular point/counterpoint debates, review papers, award papers, and something called the “editor’s picks.” Also available free are the special 50th anniversary articles published as part of the celebration of half a century of contributions by the American Association of Physicists in Medicine in 2008. Several of these were cited by Russ Hobbie and me in our American Journal of Physics “Resource Letter MP-2: Medical Physics” (Volume 77, Pages 967–978, 2009). To access this wealth of free material, just go to the home page of the Medical Physics website and click on the Open Access Tab.

Open Access publishing is becoming more common, and has been championed by many leading scientists, such as former NIH director and Nobel laureate Harold Varmus (listen to Varmus talk about open access here). Nevertheless, the topic is hotly debated. For instance, see the point/counterpoint discussion in the November 2005 issue of Medical Physics, titled “Results of Publicly Funded Scientific Research Should Be Immediately Available Without Cost to the Public.” Additional debate can be found in the journal Nature and at physicsworld.com.

 Harold Varmus discussing open access publishing.
http://www.youtube.com/watch?v=MD-OP7YScr0

Open Access to journal articles should benefit readers of Intermediate Physics for Medicine and Biology, because it will allow those readers immediate access to cutting-edge papers that otherwise would require a journal subscription. Another source of open access papers is BioMed Central:

BioMed Central is an independent publishing house committed to providing immediate open access to peer-reviewed biomedical research. All original research articles published by BioMed Central are made freely and permanently accessible online immediately upon publication. BioMed Central views open access to research as essential in order to ensure the rapid and efficient communication of research findings.

BioMed Central journals that will be of interest to readers of Intermediate Physics for Medicine and Biology are BMC Medical Physics, Biomedical Engineering Online, and Radiation Oncology.

A third source of papers is the Public Library of Science. Specific journals are PLoS One (the flagship journal, covering all areas of science), PLoS Medicine, PLoS Biology, and especially PLoS Computational Biology. Also of interest is PLoS Blogs.

The Open Access movement continues, slowly but steadily, to remake scientific publication. There are now hundreds of Open Access journals. Even some of the most prestigious leading publishers are getting into the act: the American Physical Society recently initiated the open access, all on-line journal Physical Review X to go along with its other Physical Review journals.

In the spirit of Open Access, I’m pleased to announce that the 4th edition of Intermediate Physics for Medicine and Biology will now be given away, free of cha... just kidding. Maybe someday the Open Access movement will reach to textbooks, but not yet. At least this blog is free. ;)

Destiny of the Republic

Destiny of the Republic:
A Tale of Madness, Medicine
and the Murder of a President,
by Candice Millard.

Regular readers of this blog know that I am in the habit of listening to audio books while I take my dog Suki on her daily walks. My tastes lean toward science, history, and biography, and I always keep a watch out for biological or medical physics in these books. Over the Christmas break, I listened to Destiny of the Republic: A Tale of Madness, Medicine and the Murder of a President, by Candice Millard, about the assassination of President James Garfield in 1881, shot by madman Charles Guiteau.

The book tells the fascinating story of Garfield’s nomination at the Republican National Convention in 1880, back in a time when conventions were less choreographed and predictable than they are today. Garfield nominated his fellow Ohioan John Sherman (General William Tecumseh Sherman’s brother), who was running against Senator James Blaine and former president Grant. After many ballots in which no nominee obtained a majority, the delegates turned to Garfield as their compromise choice. After being chosen the Republican nominee, he defeated Democrat and former Civil War general Winfield Scott Hancock in the general election.

A few months after being sworn in, Garfield was shot by Guiteau, who had applied for a job in the new administration but had been turned down. The bullet did not kill Garfield immediately, and he lingered on for weeks. At this point, medical physics enters the story through one of the book’s subplots about the career of Alexander Graham Bell, inventor of the telephone. Millard tells the tale of how Bell set up one of his early telephones for demonstration at the 1876 Centennial Exposition, but was ignored until a chance meeting with his acquaintance, Emperor Pedro II of Brazil, who drew attention to Bell’s display. Upon hearing that the President had been shot, Bell quickly invented a metal detector with the goal of locating the bullet still lodged in Garfield’s abdomen. The detector is based on the principle of electromagnetic induction, discussed in Section 8.6 of the 4th edition of Intermediate Physics for Medicine and Biology. A changing magnetic field induces eddy currents in a nearby conductor. These eddy currents produce their own magnetic field, which is then detected. Essentially, the device monitored changes in the inductance of the metal detector caused by the bullet. Such metal detectors are now common, particularly for nonmedical uses such as searching for metal objects buried shallowly in the ground. At the time, the device was rather novel. Michael Faraday (and, independently, Joseph Henry) had discovered electromagnetic induction in 1831, and Maxwell’s equations summarizing electromagnetic theory were formulated by James Maxwell in 1861, only twenty years before Garfield’s assassination. Being a champion of medical and biological physics, I wish I could say that Bell’s invention saved the president’s life, or at least had a positive effect during his treatment. Unfortunately, it did not, in part because of interference from metal springs in the mattress Garfield laid on, but mainly because the primary physician caring for Garfield, Dr. Willard Bliss, insisted that Bell only search the right side of the body where he believed the bullet was located, when in fact it was on the unexplored left side.

Another issue discussed in the book is the development of antiseptic methods in medicine, pioneered by Joseph Lister in the 1860s. Apparently the direct damage caused by the bullet was not life-threatening, and Millard suggests that if Garfield had received no treatment whatsoever for his wounds, he would have likely survived. Unfortunately, the doctors of that era, being skeptical or hostile to Lister’s new ideas, probed Garfield’s wound with various non-sterile instruments, including their fingers. Garfield died of an infection, possibly caused by these actions.

I enjoyed Millard’s book, and came away with a greater respect for President Garfield. Bell’s metal detector was used to locate bullets in injured soldiers throughout the rest of the 19th century, until X rays became the dominant method for finding foreign objects. It is an early example of the application of electricity and magnetism to medicine.

Listen to Candice Millard speak about her book.

 Candice Millard speaking about Destiny of the Republic.
https://www.youtube.com/embed/TmebtlLULpY

Wilhelm Roentgen

The medical use of X rays is one of the main topics discussed in the 4th edition of Intermediate Physics for Medicine and Biology. However, Russ Hobbie and I don’t say much about the discoverer of X rays, Wilhelm Roentgen (1845–1923). Let me be more precise: we never mention Roentgen at all, despite his winning the first ever Nobel Prize in Physics in 1901. We do refer to the unit bearing his name, but in an almost disparaging way:

Problem 8 The obsolete unit, the roentgen (R), is defined as 2.08 x 10⁹ ion pairs produced in 0.001 293 g of dry air. (This is 1 cm³ of dry air at standard temperature and pressure.) Show that if the average energy required to produce an ion pair in air is 33.7 eV (an old value), then 1 R corresponds to an absorbed does of 8.69 x 10^-3 Gy and that 1 R is equivalent to 2.58 x 10^-4 C kg^-1.

Asimov's Biographical Encyclopedia
of Science and Technology,
by Isaac Asimov.

Roentgen’s story is told in Asimov’s Biographical Encyclopedia of Science and Technology. (My daughter gave me a copy of this book for Christmas this year; Thanks, Kathy!)

…The great moment that lifted Roentgen out of mere competence and made him immortal came in the autumn of 1895 when he was head of the department of physics at the University of Wurzburg in Bavaria. He was working on cathode rays and repeating some of the experiments of Lenard and Crookes. He was particularly interested in the luminescence these rays set up in certain chemicals.

In order to observe the faint luminescence, he darkened the room and enclosed the cathode ray tube in thin black cardboard. On November 5, 1895, he set the enclosed cathode ray tube into action and a flash of light that did not come from the tube caught his eye. He looked up and quite a distance from the tube he noted that a sheet of paper coated with barium platinocyanide was glowing. It was one of the luminescent substances, but it was luminescing now even though the cathode rays, blocked off by the cardboard, could not possibly be reaching it.

He turned off the tube; the coated paper darkened. He turned it on again; it glowed. He walked into the next room with the coated paper, closed the door, and pulled down the blinds. The paper continued to glow while the tube was in operation…

For seven weeks he experimented furiously and then, finally, on December 28, 1895 [116 years ago this week], submitted his first paper, in which he not only announced the discovery but reported all the fundamental properties of X rays...

The first public lecture on the new phenomenon was given by Roentgen on January 23, 1896. When he had finished talking, he called for a volunteer, and Kolliker, almost eighty years old at the time, stepped up. An X-ray photograph was taken of this hand—which shows the bones in beautiful shape for an octogenarian. There was wild applause, and interest in X rays swept over Europe and America.

You can learn more about X rays in Chapter 15 (Interaction of Photons and Charged Particles with Matter) and Chapter 16 (Medical Use of X Rays) in Intermediate Physics for Medicine and Biology.

Poisson's Ratio

One of the many new problems that Russ Hobbie and I added to the 4th edition of Intermediate Physics for Medicine and Biology deals with Poisson’s ratio. From Chapter 1:

Problem 25 Figure 1.20, showing a rod subject to a force along its length, is a simplification. Actually, the cross-sectional area of the rod shrinks as the rod lengthens. Let the axial strain and stress be along the z axis. They are related to Eq. 1.25, s_z = E ε_z. The lateral strains ε_x and ε_y are related to s_z by s_z = - (E/ν) ε_x = -(E/ν) ε_y, where ν is called the “Poisson’s ratio” of the material.
(a) Use the result of Problem 13 to relate E and ν to the fractional change in volume ΔV/V.
(b) The change in volume caused by hydrostatic pressure is the sum of the volume changes caused by axial stresses in all three directions. Relate Poisson’s ratio to the compressibility.
(c) What value of ν corresponds to an incompressible material?
(d) For an isotropic material, -1 ≤ ν ≤ 0.5. How would a material with negative ν behave?
Elliott et al. (2002) measured Poisson’s ratio for articular (joint) cartilage under tension and found 1 ≤ ν ≤ 2. This large value is possible because cartilage is anisotropic: Its properties depend on direction.

The citation is to a paper by Dawn Elliott, Daria Narmoneva and Lori Setton, “Direct Measurement of the Poisson’s Ratio of Human Patella Cartilage in Tension,” in the Journal of Biomechanical Engineering, Volume 124, Pages 223–228, 2002. (Apologies to Dr. Narmoneva, whose name was misspelled in our book. It is now corrected in the errata, available at the book website.)

As hinted at in our homework problem, a particularly fascinating type of material has negative Poisson’s ratio. Some foams expand laterally, rather than contract, when you stretch them; see Roderic Lakes, “Foam Structures with a Negative Poisson’s Ratio,” Science, Volume 235, Pages 1038–1040, 1987. A model for such a material is shown in this video. Lakes’ website contains much interesting information about Poisson’s ratio. For instance, cork has a Poisson’s ratio of nearly zero, making it ideal for stopping wine bottles.

Simeon Denis Poisson (1781–1840) was a French mathematician and physicist whose name appears several times in Intermediate Physics for Medicine and Biology. Besides Poisson’s ratio, in Chapter 9 Russ and I present the Poisson equation in electrostatics, and its extension the Poisson-Boltzmann equation governing the electric field in salt water. Appendix J reviews the Poisson probability distribution. Finally, Poisson appeared in this blog before, albeit as something of a scientific villain, in the story of Poisson’s spot. Poisson is one of the 72 names appearing on the Eiffel Tower.